PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG744500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 381aa    MW: 40712.1 Da    PI: 6.0163
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG744500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.3e-27123209371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                          +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wk
  Pavir.9NG744500.1.p 123 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 208
                          689*******...*****999************************************************************.*******9 PP

              E2F_TDP  71 g 71 
                          g
  Pavir.9NG744500.1.p 209 G 209
                          8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.2E-12716380IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.6E-45117215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38121209IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-25124209IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-20124210IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.09E-43214317IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.44E-42216330No hitNo description
SMARTSM011386.0E-79216378IPR014889Transcription factor DP, C-terminal
PfamPF087819.0E-42217350IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVSGVADNPD GDGGAQRPPP PVGAGAALGT PPVSAGAAHS ASTSGGSAGS PSSRSEQHAP  60
DGAGKVAAPG AAAAASASTP ASESTFLRLN NLDINGDDAP SSQAPTSKKK KRVSRAVGPE  120
KGNRGLRQFS MKVCEKVESK GRTTYNEVAD ELVAEFTDPN NNIEAPDPDN PNAQQYDEKN  180
IRRRVYDALN VLMAMDIISK DKKEIQWKGL PRTSISDIEE LKTELVGLKG RIEKKSAYLQ  240
ELQDQYVGLQ NLIQRNEQLY GSGNTPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF  300
NSTPFELHDD SYVLKEMQFC GREQHDSTHE PTSNGGEGSS MSNIYWQQVQ HAGRPNNGTV  360
RLPGSSPIPG ILKGRVKHEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-34115214193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.305570.0leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0659570.0BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677672.10.0PREDICTED: LOC100283679 isoform X1
SwissprotQ9FNY21e-139DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A096RB500.0A0A096RB50_MAIZE; Uncharacterized protein
STRINGGRMZM2G086072_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP